STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRO01555.1RecF RecN SMC N terminal domain protein. (472 aa)    
Predicted Functional Partners:
KRO01554.1
Phage protein.
 
    0.949
KRO01553.1
Phage protein.
 
     0.926
KRO01552.1
DNA RNA helicase.
 
  
 0.893
KRO02212.1
Integral membrane sensor signal transduction histidine kinase.
  
 
  0.841
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.836
KRO03161.1
ScpA B protein; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.802
KRO01546.1
RecA-family ATPase.
  
     0.774
KRO01556.1
Hypothetical protein.
       0.773
KRO01557.1
Hypothetical protein.
       0.773
KRO01558.1
Hypothetical protein.
       0.773
Your Current Organism:
Atopobium rimae
NCBI taxonomy Id: 1383
Other names: A. rimae, ATCC 49626, CCUG 31168, DSM 7090, IFO 15546, JCM 10299, LMG 11476, LMG:11476, Lactobacillus rimae, NBRC 15546, VPI D140H-11A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.