STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXB79638.1Hypothetical protein. (56 aa)    
Predicted Functional Partners:
KXB79639.1
KEGG: pdn:HMPREF9137_1128 3.1e-166 L-serine ammonia-lyase K01752; Psort location: Cytoplasmic, score: 9.26; Belongs to the iron-sulfur dependent L-serine dehydratase family.
       0.773
KXB79637.1
Glycosyl hydrolase family 20, catalytic domain protein; KEGG: bfg:BF638R_3685 9.3e-229 putative glycosyl hydrolase lipoprotein; K12373 hexosaminidase; Psort location: Periplasmic, score: 9.76.
       0.456
Your Current Organism:
Prevotella sp. DNF00663
NCBI taxonomy Id: 1384078
Other names: P. sp. DNF00663
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