KJB97614.1 protein (Skermanella aerolata) - STRING interaction network

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second shell of interactors

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Edges:

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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[Homology]

Score

KJB97614.1

Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)

Predicted Functional Partners:

KJB93923.1

0.841

KJB93766.1

0.827

KJB90820.1

0.812

KJB90816.1

0.795

KJB90815.1

0.784

KJB90822.1

0.760

KJB93660.1

0.757

KJB90823.1

0.755

KJB90821.1

0.753

KJB93769.1

0.752

Your Current Organism:

Skermanella aerolata

NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KJB90815.1	KJB90816.1	N826_34335	N826_34340	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
KJB90815.1	KJB90820.1	N826_34335	N826_34360	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.876
KJB90815.1	KJB90821.1	N826_34335	N826_34365	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.878
KJB90815.1	KJB90822.1	N826_34335	N826_34370	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.908
KJB90815.1	KJB90823.1	N826_34335	N826_34375	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.877
KJB90815.1	KJB93660.1	N826_34335	N826_13920	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	WalW protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.792
KJB90815.1	KJB93766.1	N826_34335	N826_13875	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.876
KJB90815.1	KJB93769.1	N826_34335	N826_13930	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.812
KJB90815.1	KJB93923.1	N826_34335	N826_13680	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
KJB90815.1	KJB97614.1	N826_34335	N826_02480	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KJB90816.1	KJB90815.1	N826_34340	N826_34335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
KJB90816.1	KJB90820.1	N826_34340	N826_34360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Polysaccharide deacetylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.894
KJB90816.1	KJB90821.1	N826_34340	N826_34365	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.898
KJB90816.1	KJB90822.1	N826_34340	N826_34370	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar transferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.919
KJB90816.1	KJB90823.1	N826_34340	N826_34375	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.898
KJB90816.1	KJB93660.1	N826_34340	N826_13920	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	WalW protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.804
KJB90816.1	KJB93766.1	N826_34340	N826_13875	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.819
KJB90816.1	KJB93769.1	N826_34340	N826_13930	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.801
KJB90816.1	KJB93923.1	N826_34340	N826_13680	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.969
KJB90816.1	KJB97614.1	N826_34340	N826_02480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.795

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019344

Cysteine biosynthetic process

5 of 7

2.29

3.85

1.62e-08

GO:1901607

Alpha-amino acid biosynthetic process

11 of 81

1.57

3.51

1.12e-14

GO:0009097

Isoleucine biosynthetic process

4 of 7

2.2

2.9

1.46e-06

GO:0009069

Serine family amino acid metabolic process

6 of 29

1.76

2.86

5.38e-08

GO:0009099

Valine biosynthetic process

3 of 4

2.32

2.25

4.84e-05

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004795

Threonine synthase activity

3 of 3

2.44

2.06

0.00014

GO:0016835

Carbon-oxygen lyase activity

5 of 41

1.53

1.63

8.00e-05

GO:0016829

Lyase activity

7 of 104

1.27

1.47

1.22e-05

GO:0030170

Pyridoxal phosphate binding

4 of 30

1.57

1.43

0.00048

GO:0052656

L-isoleucine transaminase activity

2 of 2

2.44

1.24

0.0052

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

10 of 876

0.5

0.38

0.0038

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:1781

Sulfur amino acid biosynthetic process, and Threonine metabolic process

6 of 21

1.9

3.27

1.80e-08

CL:1719

Cellular amino acid biosynthetic process

8 of 52

1.63

3.0

6.62e-10

CL:1811

Threonine synthase activity, and Threonine biosynthetic process

3 of 5

2.22

1.89

0.00023

CL:1500

Biosynthesis of amino acids, and Carbon metabolism

11 of 187

1.21

1.87

4.02e-11

CL:1549

Valine, leucine and isoleucine biosynthesis

3 of 12

1.84

1.38

0.0016

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map01230

Biosynthesis of amino acids

11 of 130

1.37

2.55

1.57e-13

map00260

Glycine, serine and threonine metabolism

6 of 46

1.56

2.29

2.93e-07

map00750

Vitamin B6 metabolism

3 of 10

1.92

1.84

0.00016

map00290

Valine, leucine and isoleucine biosynthesis

4 of 27

1.61

1.73

7.59e-05

map00270

Cysteine and methionine metabolism

4 of 36

1.49

1.51

0.00016

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0663

Pyridoxal phosphate

3 of 17

1.69

1.2

0.0030

KW-0028

Amino-acid biosynthesis

4 of 45

1.39

1.07

0.0027

KW-0822

Tryptophan biosynthesis

2 of 6

1.96

0.99

0.0126

KW-0456

Lyase

4 of 59

1.27

0.98

0.0030

KW-0032

Aminotransferase

2 of 16

1.54

0.67

0.0448

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00291

Pyridoxal-phosphate dependent enzyme

5 of 11

2.1

3.06

3.88e-07

PF01063

Amino-transferase class IV

2 of 2

2.44

0.99

0.0151

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036052

Tryptophan synthase beta chain-like, PALP domain superfamily

5 of 11

2.1

2.89

1.01e-06

IPR001926

Tryptophan synthase beta chain-like, PALP domain

5 of 11

2.1

2.89

1.01e-06

IPR000634

Serine/threonine dehydratase, pyridoxal-phosphate-binding site

3 of 3

2.44

1.92

0.00026

IPR043132

Branched-chain-amino-acid aminotransferase-like, C-terminal

2 of 2

2.44

0.93

0.0197

IPR043131

Branched-chain-amino-acid aminotransferase-like, N-terminal

2 of 2

2.44

0.93

0.0197

(more ...)

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