STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB94338.1Radical SAM protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (354 aa)    
Predicted Functional Partners:
moaA
Molybdenum cofactor biosynthesis protein MoeA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
 
  
 0.892
KJB94337.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.888
KJB93164.1
AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.804
KJB93162.1
Protein nirG; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.801
KJB91636.1
Protein nirG; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.800
KJB94335.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.780
KJB94336.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.780
KJB94341.1
Transketolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
    0.768
KJB94334.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.737
KJB94339.1
Sporadic carbohydrate cluster protein, TIGR04323 family; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.727
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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