STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB93994.1Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (288 aa)    
Predicted Functional Partners:
KJB93993.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.995
KJB93995.1
Squalene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
0.988
KJB94918.1
Phytoene desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.963
KJB96143.1
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.961
KJB94919.1
Phytoene desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.954
KJB96135.1
CrtD protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.950
KJB94866.1
SAM-dependent methyltransferase PhcB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.919
KJB96215.1
Type 11 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.919
KJB90228.1
Geranylgeranyl diphosphate reductase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
 0.910
KJB93996.1
Phytoene synthase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
  
 
0.889
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.