STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB96175.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (444 aa)    
Predicted Functional Partners:
KJB96100.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
KJB96101.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
KJB97395.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.490
atpB
F0F1 ATP synthase subunit A; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane. Belongs to the ATPase A chain family.
    
  0.483
KJB90957.1
Cupin; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.466
KJB95108.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
KJB96946.1
Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.433
KJB92008.1
Pyridoxamine 5'-phosphate oxidase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.424
atpF
F0F1 ATP synthase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
  0.414
atpF-2
F-type H+-transporting ATPase subunit B; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
  0.414
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.