STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB95700.1Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (323 aa)    
Predicted Functional Partners:
KJB95701.1
Cyanuric acid amidohydrolase; Responsible for the hydrolysis of cyanuric acid, an intermediate formed during catabolism of s-triazine based compounds in herbicides such as atrazine and polymers such as melamine. Catalyzes the hydrolytic opening of the s-triazine ring of cyanuric acid (2,4,6- trihydroxy-s-triazine) to yield carbon dioxide and carboxybiuret, which spontaneously decarboxylates to biuret; Belongs to the cyclic amide hydrolase (CyAH) family.
 
     0.802
KJB95702.1
Cytosine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.782
KJB96203.1
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.735
KJB95703.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.672
KJB95326.1
Cobalt-containing nitrile hydratase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.671
KJB96017.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.665
KJB95699.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.664
KJB94685.1
Aliphatic nitrilase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
 0.564
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
     
 0.561
KJB90589.1
3-keto-5-aminohexanoate cleavage protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
     
 0.560
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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