STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KJB95718.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0434 family. (78 aa)    
Predicted Functional Partners:
KJB95719.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
KJB95716.1
Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
KJB95717.1
Peptidase S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.757
KJB95715.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.622
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
  
    0.588
KJB96377.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.521
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
  
 
  0.506
KJB97082.1
Type 11 methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.503
KJB95771.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.484
prmC
N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
  
 
 0.469
Your Current Organism:
Skermanella aerolata
NCBI taxonomy Id: 1385368
Other names: S. aerolata KACC 11604, Skermanella aerolata 5416T-32, Skermanella aerolata DSM 18479, Skermanella aerolata KACC 11604
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.