STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD04749.1Glycine betaine/proline transport system substrate-binding protein. (306 aa)    
Predicted Functional Partners:
SMD04729.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.996
SMD04742.1
Glycine betaine/proline transport system permease protein.
 
 0.996
SMC76834.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.972
SMC64409.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.969
SMC76845.1
Glycine betaine/proline transport system permease protein.
 
 0.955
SMC64391.1
Glycine betaine/proline transport system permease protein.
 
 0.924
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.924
SMC64426.1
Glycine betaine/proline transport system substrate-binding protein.
     
 
0.817
SMC76891.1
Glycine betaine/proline transport system substrate-binding protein.
     
  0.817
SMC76896.1
Glycine betaine/proline transport system substrate-binding protein.
     
  0.817
Your Current Organism:
Pseudooceanicola flagellatus
NCBI taxonomy Id: 1387277
Other names: CGMCC 1.12664, LMG 27871, LMG:27871, Oceanicola flagellatus, Oceanicola flagellatus Huo et al. 2014, Oceanicola sp. DY470, P. flagellatus, Pseudooceanicola flagellatus (Huo et al. 2014) Huang et al. 2018, strain DY470
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