STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD08656.1Hypothetical protein. (166 aa)    
Predicted Functional Partners:
SMD08637.1
tRNA-binding protein.
       0.776
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
       0.776
SMC73413.1
DnaJ domain-containing protein.
  
     0.762
SMC92886.1
DNA polymerase III, chi subunit.
  
     0.705
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
     0.680
SMC56448.1
Predicted lipid-binding transport protein, Tim44 family.
  
     0.677
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
  
     0.668
SMC74508.1
Hypothetical protein.
  
     0.662
SMD11621.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
  
     0.644
SMC62458.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Pseudooceanicola flagellatus
NCBI taxonomy Id: 1387277
Other names: CGMCC 1.12664, LMG 27871, LMG:27871, Oceanicola flagellatus, Oceanicola flagellatus Huo et al. 2014, Oceanicola sp. DY470, P. flagellatus, Pseudooceanicola flagellatus (Huo et al. 2014) Huang et al. 2018, strain DY470
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