STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD10397.1Phosphonoacetate hydrolase. (419 aa)    
Predicted Functional Partners:
SMD10402.1
Phosphonoacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
  0.939
phnW
2-aminoethylphosphonate-pyruvate transaminase; Involved in phosphonate degradation; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. PhnW subfamily.
 
     0.927
SMD10384.1
Aminoethylphosphonate catabolism associated LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
     0.857
SMD10420.1
phosphate:Na+ symporter.
 
     0.747
SMD10410.1
EamA-like transporter family protein.
 
     0.708
SMD03061.1
Exosortase D, VPLPA-CTERM-specific.
   
 
  0.563
SMD07349.1
Adenosine deaminase.
     
 0.552
SMC77870.1
Starch phosphorylase; Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
     
 0.549
SMD04508.1
Hypothetical protein.
    
  0.539
SMD08179.1
Amino acid/polyamine/organocation transporter, APC superfamily.
  
  
  0.534
Your Current Organism:
Pseudooceanicola flagellatus
NCBI taxonomy Id: 1387277
Other names: CGMCC 1.12664, LMG 27871, LMG:27871, Oceanicola flagellatus, Oceanicola flagellatus Huo et al. 2014, Oceanicola sp. DY470, P. flagellatus, Pseudooceanicola flagellatus (Huo et al. 2014) Huang et al. 2018, strain DY470
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