STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctAC4-dicarboxylate transport protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96603; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family. (440 aa)    
Predicted Functional Partners:
rocA1
Hypothetical protein; Ab initio prediction:Prodigal:2.6; Belongs to the aldehyde dehydrogenase family.
   
  
 0.794
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
 
  
 0.571
sglT_2
Sodium/glucose cotransporter; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96169; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.563
sglT_3
Sodium/glucose cotransporter; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96169; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.536
cstA
Carbon starvation protein A; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P15078.
 
  
 0.532
yecS
L-cystine transport system permease protein YecS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AFT2.
  
  
 0.532
APW60110.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
    
  0.523
gltB
Ferredoxin-dependent glutamate synthase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P55037.
     
 0.511
sglT_1
Sodium/glucose cotransporter; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96169; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.511
gltA2
Citrate synthase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WPD5; Belongs to the citrate synthase family.
  
  
 0.483
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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