STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysXAlpha-aminoadipate--LysW ligase LysX; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q5SH23; Belongs to the RimK family. (296 aa)    
Predicted Functional Partners:
mdcB
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01883.
     0.958
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.863
fhcC
Formyltransferase/hydrolase complex Fhc subunit C; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:C5B135.
 
     0.860
fhcD
Formyltransferase/hydrolase complex subunit D; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.788
APW58756.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.727
fhcA
Formyltransferase/hydrolase complex Fhc subunit A; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:C5B137.
 
     0.704
APW58768.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.703
APW58767.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
    0.699
mtdA
Bifunctional protein MdtA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P55818.
 
     0.690
APW58769.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.683
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.