STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW58769.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (320 aa)    
Predicted Functional Partners:
APW58768.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.953
APW58767.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.950
fhcA
Formyltransferase/hydrolase complex Fhc subunit A; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:C5B137.
 
     0.851
fhcB
Formyltransferase/hydrolase complex Fhc subunit B; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:C5B138.
 
     0.850
fhcD
Formyltransferase/hydrolase complex subunit D; Catalyzes the transfer of a formyl group from 5-formyl tetrahydromethanopterin (5-formyl-H(4)MPT) to methanofuran (MFR) so as to produce formylmethanofuran (formyl-MFR) and tetrahydromethanopterin (H(4)MPT); Belongs to the FTR family.
 
     0.834
fhcC
Formyltransferase/hydrolase complex Fhc subunit C; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:C5B135.
 
     0.828
mch
Methenyltetrahydromethanopterin cyclohydrolase; Catalyzes the hydrolysis of methenyl-H(4)MPT(+) to 5-formyl- H(4)MPT; Belongs to the MCH family.
 
     0.827
mdcB
2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01883.
 
     0.825
APW63353.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.798
fae_1
5,6,7,8-tetrahydromethanopterin hydro-lyase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9FA38.
 
     0.790
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.