STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptlIPentalenene oxygenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q82IY3; Belongs to the cytochrome P450 family. (456 aa)    
Predicted Functional Partners:
cysJ
Sulfite reductase [NADPH] flavoprotein alpha-component; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O32214.
 
  
 
 0.915
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.887
APW58971.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 0.856
APW62355.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 0.856
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.855
APW62054.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
 0.831
APW63093.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 0.679
sauU_1
Putative sulfoacetate transporter SauU; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q0K843.
       0.651
APW61335.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
   
 0.650
yhaO
Putative metallophosphoesterase YhaO; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O07522.
    
 0.606
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.