STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aguAAgmatine deiminase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9I6J9; Belongs to the agmatine deiminase family. (373 aa)    
Predicted Functional Partners:
APW58939.1
N-carbamoyl-D-amino acid hydrolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P60327.
 
 0.998
ramA_2
(R)-stereoselective amidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q75SP7.
 
 
 0.974
pdaD
Pyruvoyl-dependent arginine decarboxylase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01404.
    
  0.906
APW59158.1
N-carbamoyl-D-amino acid hydrolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q44185.
 
  
 0.774
ramA_3
(R)-stereoselective amidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q75SP7.
  
 0.763
APW58937.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.732
ramA_1
(R)-stereoselective amidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q75SP7.
 
  
 0.702
ramA_5
(R)-stereoselective amidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q75SP7.
  
 0.620
ramA_4
(R)-stereoselective amidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q75SP7.
  
 0.618
amiF
Formamidase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O25836.
 
  
 0.581
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.