STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
resESensor histidine kinase ResE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P35164. (618 aa)    
Predicted Functional Partners:
algB
Alginate biosynthesis transcriptional regulatory protein AlgB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23747.
 
 
  0.955
phoB
Phosphate regulon transcriptional regulatory protein PhoB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AFJ5.
 
 
   0.938
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
 
 
0.936
tcrX_1
Putative transcriptional regulatory protein TcrX; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O69730.
 
   0.934
barA
Signal transduction histidine-protein kinase BarA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AEC5.
 
 
0.916
pleD_2
Response regulator PleD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9A5I5.
 
   0.898
todS
Sensor histidine kinase TodS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:E0X9C7.
 
 
0.848
APW62034.1
Putative diguanylate cyclase, distantly related to bacterial beta-galactosidase; Manual prediction.
 
 
 0.841
todT
Response regulator protein TodT; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:I7CA98.
 
 
   0.820
phoP_1
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P13792.
 
   0.788
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.