STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW58985.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (663 aa)    
Predicted Functional Partners:
APW61802.1
Hypothetical protein; Manual prediction; probably involved in carbohydrate and/or nitrogen metabolism (it contains putative sugar binding domain and it has homology with fungal glutaminase).
 
     0.758
APW61230.1
Retaining beta-L-arabinofuranosidase; Manual prediction with dbCAN.
  
     0.715
APW60054.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.677
APW63611.1
Retaining alpha-L-fucosidase; Manual prediction with dbCAN.
  
     0.673
zraS_2
Sensor protein ZraS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P14377.
       0.651
APW63571.1
Retaining alpha-L-arabinofuranosidase; Manual prediction with dbCAN.
 
   
 0.624
APW58934.1
Inverting alpha-L-rhamnosidase; Manual prediction with dbCAN.
  
     0.601
APW62719.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.591
APW61977.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.586
APW58899.1
Putative TIM-barrel-type glycoside hydrolase of unknown function; Manual prediction.
  
     0.584
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.