STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysK1O-acetylserine sulfhydrylase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WP55. (324 aa)    
Predicted Functional Partners:
cysE
Serine acetyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q06750.
 
 0.994
metC
Cystathionine beta-lyase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q83A83.
 0.983
mccB
Cystathionine gamma-lyase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O05394.
 
 0.979
cysJ
Sulfite reductase [NADPH] flavoprotein alpha-component; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O32214.
 
 
 0.951
sir_2
Sulfite reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P72854; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 
 0.944
cysS
Cysteine--tRNA ligase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q99W73; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.913
aspC
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56232.
   
 0.906
APW63497.1
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23034.
   
 0.906
cdoA
Cysteine dioxygenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O32085.
     
  0.900
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
 
 0.876
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.