STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaCGT2 family glycosyltransferase; Ab initio prediction:Prodigal:2.6; manual prediction with dbCAN. (369 aa)    
Predicted Functional Partners:
gumD_1
UDP-glucose:undecaprenyl-phosphate glucose-1-phosphate transferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56770.
 
  
 0.821
rmlD_2
dTDP-4-dehydrorhamnose reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O66251.
 
  
 0.783
rfbB_2
dTDP-glucose 4,6-dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39630; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.777
rmlD_1
dTDP-4-dehydrorhamnose reductase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O66251.
 
  
 0.772
APW60249.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.758
tagG_1
Teichoic acid translocation permease protein TagG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42953.
 
  
 0.688
wbbL_1
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WMY3.
 
    
0.629
APW60259.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.615
ribF
Riboflavin biosynthesis protein RibF; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q59263; Belongs to the ribF family.
 
      0.609
APW61036.1
Putative S-adenosylmethionine-dependent methyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:A0QUV5.
    0.589
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.