STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW59092.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (153 aa)    
Predicted Functional Partners:
sdpR_1
Transcriptional repressor SdpR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O32242.
    0.994
APW59094.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.522
oxlT
Oxalate:formate antiporter; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q51330.
  
    0.503
APW59095.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.475
APW59360.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.469
pcp_1
Pseudomonalisin; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42790.
       0.465
APW58667.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.443
oprO_2
Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P32977.
  
     0.438
APW62968.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.434
APW64173.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.416
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.