STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hemL_1Glutamate-1-semialdehyde 2,1-aminomutase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P24630; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (440 aa)    
Predicted Functional Partners:
hemB
Delta-aminolevulinic acid dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77969; Belongs to the ALAD family.
 
 
 0.989
hemL_2
Glutamate-1-semialdehyde 2,1-aminomutase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q31QJ2.
  
  
 
0.917
dltA
D-alanine--poly(phosphoribitol) ligase subunit 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39581; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.909
hemC
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
  
 0.905
nasF
Uroporphyrinogen-III C-methyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42437.
 
  
 0.811
dgoD
D-galactonate dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2UCA8; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
       0.648
fabD
Malonyl CoA-acyl carrier protein transacylase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O85140.
    
 0.638
fabF_3
3-oxoacyl-[acyl-carrier-protein] synthase 2; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P73283; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
  
 0.587
APW59182.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.554
fabF_4
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 
  
 0.544
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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