STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW59295.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (334 aa)    
Predicted Functional Partners:
APW63436.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.753
xcpT_16
Type II secretion system protein G; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q00514.
  
     0.737
APW59744.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.723
APW59441.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.706
bamD_1
Outer membrane protein assembly factor BamD; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00922.
 
     0.702
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
  
     0.700
APW63035.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.697
APW60023.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.693
sigA_4
RNA polymerase sigma factor SigA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77994; Belongs to the sigma-70 factor family.
  
     0.672
prsA
Foldase protein PrsA; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01145.
  
     0.663
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.