STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW59411.1D-tagatose 3-epimerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O50580. (291 aa)    
Predicted Functional Partners:
asbF
3-dehydroshikimate dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q81RQ4.
  
  
  0.951
ulaE_1
L-ribulose-5-phosphate 3-epimerase UlaE; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01951.
 
  
 
0.926
APW60062.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
    0.723
APW63922.1
Alpha/beta hydrolase: peptidase or carbohydrate esterase; Ab initio prediction:Prodigal:2.6.
  
     0.712
APW58744.1
D-tagatose 3-epimerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O50580.
  
     0.709
APW63667.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.697
APW58894.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.680
APW59265.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.657
APW58875.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
    0.643
APW60011.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.635
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.