STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW59663.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (392 aa)    
Predicted Functional Partners:
APW60927.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
   
 0.769
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.722
APW60345.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.670
APW61343.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.626
APW60625.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.609
APW61345.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.609
rpoA_2
DNA-directed RNA polymerase subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q664U6.
  
   0.603
APW59419.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.599
APW61691.1
Acyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P75920.
  
     0.592
novG
Transcriptional regulator NovG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9L9G1.
  
     0.588
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.