STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nudF_1ADP-ribose pyrophosphatase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54570; Belongs to the Nudix hydrolase family. (185 aa)    
Predicted Functional Partners:
nnr_1
Bifunctional NAD(P)H-hydrate repair enzyme Nnr; Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epimers of NAD(P)HX; Belongs to the NnrE/AIBP family.
  
 0.922
nudF_3
ADP-ribose pyrophosphatase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54570.
  
  
 
0.920
prs_1
Ribose-phosphate pyrophosphokinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P65235.
  
 
 0.907
prs_2
Ribose-phosphate pyrophosphokinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P14193.
  
 
 0.907
pgcA
Phosphoglucomutase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P18159.
  
  0.903
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
   
 0.694
teaD
TRAP-T-associated universal stress protein TeaD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:E1VBK4.
       0.664
cshA_1
DEAD-box ATP-dependent RNA helicase CshA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96614; Belongs to the DEAD box helicase family.
   
 0.663
cshA_2
DEAD-box ATP-dependent RNA helicase CshA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P96614; Belongs to the DEAD box helicase family.
   
 0.663
ilvE_2
Branched-chain-amino-acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
     
 0.601
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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