STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW59845.1Retaining beta-galactosidase or retaining beta-glucuronidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 2 family. (784 aa)    
Predicted Functional Partners:
APW59846.1
Putative beta-propeller-type glycoside hydrolase of unknown function, putative beta-galactosidase; Manual prediction.
       0.773
lacC
Tagatose-6-phosphate kinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23391.
   
    0.728
APW58934.1
Inverting alpha-L-rhamnosidase; Manual prediction with dbCAN.
 
   0.707
APW62005.1
Inverting alpha-L-rhamnosidase; Manual prediction with dbCAN.
 
   0.658
APW61721.1
Inverting alpha-1,5-L-arabinofuranosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
     0.655
APW59047.1
Inverting alpha-1,5-L-arabinofuranosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
     0.638
APW61230.1
Retaining beta-L-arabinofuranosidase; Manual prediction with dbCAN.
 
     0.612
APW62002.1
Retaining endo-levanase or other beta-fructosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 32 family.
  
  
 0.612
mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 0.603
APW63571.1
Retaining alpha-L-arabinofuranosidase; Manual prediction with dbCAN.
 
   
 0.603
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.