STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tagH_2Teichoic acids export ATP-binding protein TagH; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42954. (417 aa)    
Predicted Functional Partners:
tagG_2
Teichoic acid translocation permease protein TagG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42953.
 
 0.998
tagG_1
Teichoic acid translocation permease protein TagG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42953.
 
 
 0.989
APW60249.1
GT2 and GT4 families glycosyltransferase; Manual prediction with dbCAN.
 
 
 0.819
APW59900.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.713
pyrE_2
Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208.
   
    0.703
sigW_14
ECF RNA polymerase sigma factor SigW; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q45585; Belongs to the sigma-70 factor family.
  
  
 0.659
APW59903.1
GT2 family glycosyltransferase; Manual prediction with dbCAN.
 
  
 0.606
APW59902.1
GT4 family glycosyltransferase; Manual prediction with dbCAN.
  
   0.595
APW60345.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
  
 0.536
APW62195.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
  
 0.536
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.