STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rip3_2Putative zinc metalloprotease Rip3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WHR1. (360 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly factor BamA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9K1H0.
 
  
 0.806
rip3_1
Putative zinc metalloprotease Rip3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WHR1.
 
   
 0.796
rip3_3
Putative zinc metalloprotease Rip3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WHR1; Belongs to the peptidase M50B family.
 
   
 0.796
APW59978.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
    0.773
uppS
Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
  
 0.740
APW63131.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
   
 0.668
coaD
Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.544
gltB
Ferredoxin-dependent glutamate synthase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P55037.
  
  
 0.535
APW59979.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.533
APW59980.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.533
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.