STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
noxNADH dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q60049. (193 aa)    
Predicted Functional Partners:
rbbA
Ribosome-associated ATPase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P37624.
  
  
 0.622
yhhJ
Inner membrane transport permease YhhJ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AGH1.
  
  
 0.581
ybhR
Inner membrane transport permease YbhR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AFP9.
  
  
 0.581
APW60148.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.527
natB
ABC transporter permease protein NatB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P46904.
  
  
 0.510
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the GTP cyclohydrolase II family. In the N-terminal section; belongs to the DHBP synthase family.
  
 
 0.495
gltB
Ferredoxin-dependent glutamate synthase 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P55037.
     
 0.492
yfiT_2
Putative metal-dependent hydrolase YfiT; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31562.
 
    0.444
APW60150.1
Putative beta-jelly-roll-type glycoside hydrolase of unknown function; Manual prediction.
       0.440
metH
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.406
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.