STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiG_2Ubiquinone biosynthesis O-methyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00472. (293 aa)    
Predicted Functional Partners:
novG
Transcriptional regulator NovG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9L9G1.
  
     0.594
APW64122.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.592
APW61036.1
Putative S-adenosylmethionine-dependent methyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:A0QUV5.
 
 
   0.574
APW59133.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.565
ispG
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin); Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME- 2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate. Belongs to the IspG family.
     
 0.529
APW60594.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.509
APW60221.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.494
bepA_8
Beta-barrel assembly-enhancing protease; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00997.
 
     0.472
APW63649.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.459
APW61677.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.436
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.