STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW60380.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (363 aa)    
Predicted Functional Partners:
menH_3
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01660.
  
     0.750
menH_2
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01660.
  
     0.747
APW60379.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.675
rtxA
Multifunctional-autoprocessing repeats-in-toxin; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KS12.
 
     0.536
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
       0.525
APW61746.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.493
APW62744.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.471
APW60268.1
Putative glycosyltransferase of unknown function; Manual prediction.
  
     0.442
APW59401.1
Putative glycosyltransferase of unknown function; Manual prediction.
  
     0.429
APW62743.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.421
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.