STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmgCAcyl-CoA dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45857. (635 aa)    
Predicted Functional Partners:
fadB
Fatty acid oxidation complex subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21177.
 
 0.997
nqo4
NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 0.990
fadA
3-ketoacyl-CoA thiolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P28790; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.951
fadJ
Fatty acid oxidation complex subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77399.
 
 0.912
paaF
2,3-dehydroadipyl-CoA hydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P76082; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.907
thlA
Acetyl-CoA acetyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45359; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.896
lcdH
L-carnitine dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9HTH8.
 
 
 0.855
APW60507.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
     
 0.718
APW58971.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 0.692
APW62355.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 0.692
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.