STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadA3-ketoacyl-CoA thiolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P28790; Belongs to the thiolase-like superfamily. Thiolase family. (386 aa)    
Predicted Functional Partners:
fadB
Fatty acid oxidation complex subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21177.
 0.999
fadJ
Fatty acid oxidation complex subunit alpha; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77399.
 0.992
paaF
2,3-dehydroadipyl-CoA hydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P76082; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.989
lcdH
L-carnitine dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9HTH8.
 
 
 0.972
mmgC
Acyl-CoA dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45857.
 
 
 0.951
pccB
Propionyl-CoA carboxylase beta chain; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q3J4E3.
  
 0.937
accA1
Acetyl-/propionyl-coenzyme A carboxylase alpha chain; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WPQ3.
  
 0.930
thlA
Acetyl-CoA acetyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45359; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 
0.917
iolA
Methylmalonate semialdehyde dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42412.
   
 0.910
acdA
Acyl-CoA dehydrogenase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P45867.
 
 
 0.909
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.