STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nikQNickel transport protein NikQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:D5AQY7. (208 aa)    
Predicted Functional Partners:
nikMN
Fused nickel transport protein NikMN; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:D5AQY8.
 
 0.999
cbiO
Cobalt import ATP-binding protein CbiO; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O68106.
 0.999
rbbA
Ribosome-associated ATPase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P37624.
  
 
 0.963
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.783
APW60723.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.504
thiG
Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.504
adk
Adenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family.
  
  
 0.492
cbiET
Cobalamin biosynthesis bifunctional protein CbiET; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O87694.
  
  
 0.491
cbiA
Cobyrinate a,c-diamide synthase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P29946.
 
  
 0.462
nasF
Uroporphyrinogen-III C-methyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P42437.
     
 0.436
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.