STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknB_11Serine/threonine-protein kinase PknB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:A0QNG1. (1086 aa)    
Predicted Functional Partners:
stp_2
Serine/threonine phosphatase stp; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8Y678.
 
   0.815
stp_3
Serine/threonine phosphatase stp; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8Y678.
 
   0.815
APW63457.1
Putative protein phosphatase 2C-type; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q5XAP6.
 
   0.808
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.498
APW61746.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.485
prkC_17
Serine/threonine-protein kinase PrkC; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34507.
 
 
  
0.475
pkn6
Serine/threonine-protein kinase pkn6; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54738.
 
 
  
0.473
APW60809.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
 
 
 0.472
bepA_8
Beta-barrel assembly-enhancing protease; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00997.
 
     0.444
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.