STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW60916.1Retaining malto-oligosyltrehalose trehalohydrolase; Manual prediction with dbCAN. (665 aa)    
Predicted Functional Partners:
APW60918.1
Malto-oligosyltrehalose synthase; Manual prediction with dbCAN.
 
 0.998
APW63993.1
Trehalose synthase; Manual prediction with dbCAN.
 
 
0.986
APW60919.1
Retaining isoamylase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 13 family.
  
0.945
APW59639.1
Retaining isoamylase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 13 family.
  
0.850
APW60994.1
Glycogen or starch phosphorylase; Manual prediction with dbCAN.
  
 
 0.792
glgA
GT5 family glycosyltransferase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.783
glgC_1
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
 
  
 0.779
APW60110.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
    
 
 0.765
glgC_2
Glucose-1-phosphate adenylyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P30521; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
  
  
 0.750
APW60915.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.497
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.