STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
macB_4Macrolide export ATP-binding/permease protein MacB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q2EHL8. (406 aa)    
Predicted Functional Partners:
lolD_3
Lipoprotein-releasing system ATP-binding protein LolD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O66646.
 
 
 0.941
yknY_5
Putative ABC transporter ATP-binding protein YknY; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31711.
 
 0.882
yknY_2
Putative ABC transporter ATP-binding protein YknY; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31711.
 
 0.881
yknY_4
Putative ABC transporter ATP-binding protein YknY; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31711.
 
 0.881
yknY_3
Putative ABC transporter ATP-binding protein YknY; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31711.
 
 0.858
ytrE
ABC transporter ATP-binding protein YtrE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34392.
 
 0.849
lolD_1
Lipoprotein-releasing system ATP-binding protein LolD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P75957.
 
 0.843
lolD_2
Lipoprotein-releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
 
 0.825
yknY_1
Putative ABC transporter ATP-binding protein YknY; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O31711.
 
 
 0.781
lolE
Lipoprotein-releasing system transmembrane protein LolE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P75958.
  
     0.741
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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