STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asnB_3Asparagine synthetase [glutamine-hydrolyzing] 1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54420. (641 aa)    
Predicted Functional Partners:
pyrB
Aspartate/ornithine carbamoyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P56585; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
  
 
 0.912
argG
Argininosuccinate synthase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WPW7; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 0.911
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
   
 
 0.910
aspC
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56232.
     
 0.901
APW63497.1
Aspartate aminotransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23034.
     
 0.901
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
  0.900
APW61573.1
Aspartate kinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q88EI9.
  
 
 0.849
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
  0.800
APW61185.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
    0.574
fabD
Malonyl CoA-acyl carrier protein transacylase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O85140.
  
    0.496
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.