STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acpP_4Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (80 aa)    
Predicted Functional Partners:
nqo4
NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
   
 0.999
pksL
Polyketide synthase PksL; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q05470; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.931
ctaE
Cytochrome c oxidase subunit 3; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9AEL8.
   
 
 0.922
acpP_3
Acyl carrier protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q5HGK0.
  
  
  0.913
acpP_1
Acyl carrier protein; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01217.
     
  0.900
acpP_2
Acyl carrier protein; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01217.
     
  0.900
APW62353.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
     
  0.900
acpP_5
Acyl carrier protein; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01217.
     
  0.900
nqo2
NADH-quinone oxidoreductase subunit 2; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q56221.
   
  0.880
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
   
 
 0.876
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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