STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW61502.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (323 aa)    
Predicted Functional Partners:
ftsA
Cell division protein FtsA; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_02033.
 
    0.542
APW61503.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.524
APW63436.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.522
rpmB
50S ribosomal protein L28; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P60494; Belongs to the bacterial ribosomal protein bL28 family.
  
     0.514
sigA_4
RNA polymerase sigma factor SigA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P77994; Belongs to the sigma-70 factor family.
  
     0.513
APW59347.1
Putative uridylyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q7A4A4.
  
     0.496
APW63676.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.439
APW63066.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.432
APW61504.1
Alpha/beta hydrolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:D5EV35.
       0.416
APW63099.1
Catalytically inactive endo-beta-xylanase-like protein; Manual prediction with dbCAN.
  
     0.413
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.