STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW61613.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (731 aa)    
Predicted Functional Partners:
nqo4
NADH-quinone oxidoreductase subunit 4; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family.
    
   0.917
APW58866.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.678
APW63554.1
Alpha/beta hydrolase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:D5EV35.
  
     0.630
aes
Acetyl esterase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01958.
  
     0.615
APW63639.1
Inverting glycoside hydrolase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
     0.588
APW62019.1
Inverting alpha-1,2-L-fucosidase; Manual prediction with dbCAN.
  
     0.556
APW61612.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.513
APW61335.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
 
   0.495
APW63093.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 
 0.462
APW58971.1
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:B2HIL7.
  
 
 0.433
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.