STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpQ_2Glycerophosphoryl diester phosphodiesterase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P10908. (595 aa)    
Predicted Functional Partners:
glpQ
Glycerophosphoryl diester phosphodiesterase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P09394.
  
  
 
0.929
ugpQ_1
Glycerophosphoryl diester phosphodiesterase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P10908.
  
  
 
0.929
eutC
Ethanolamine ammonia-lyase light chain; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P19636; Belongs to the EutC family.
     
  0.900
eutB
Ethanolamine ammonia-lyase heavy chain; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AEJ6.
     
  0.900
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
 
  
 0.688
sigE_14
ECF RNA polymerase sigma factor SigE; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:A0R2D4; Belongs to the sigma-70 factor family. ECF subfamily.
       0.511
APW61683.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.495
APW60734.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.494
glpF
Glycerol uptake facilitator protein; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AER0; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.440
aqpZ2
Aquaporin Z 2; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8UJW4; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.440
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.