STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62019.1Inverting alpha-1,2-L-fucosidase; Manual prediction with dbCAN. (823 aa)    
Predicted Functional Partners:
APW63611.1
Retaining alpha-L-fucosidase; Manual prediction with dbCAN.
  
 
  0.966
APW63639.1
Inverting glycoside hydrolase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
 
     0.799
APW61230.1
Retaining beta-L-arabinofuranosidase; Manual prediction with dbCAN.
  
     0.745
APW63571.1
Retaining alpha-L-arabinofuranosidase; Manual prediction with dbCAN.
 
     0.729
APW61403.1
Retaining beta-glycosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
 
   0.672
APW58934.1
Inverting alpha-L-rhamnosidase; Manual prediction with dbCAN.
  
     0.664
APW62005.1
Inverting alpha-L-rhamnosidase; Manual prediction with dbCAN.
  
     0.636
APW59047.1
Inverting alpha-1,5-L-arabinofuranosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
  
     0.630
APW61721.1
Inverting alpha-1,5-L-arabinofuranosidase; Manual prediction with dbCAN; Belongs to the glycosyl hydrolase 43 family.
  
     0.616
APW58866.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
   0.600
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.