STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62034.1Putative diguanylate cyclase, distantly related to bacterial beta-galactosidase; Manual prediction. (678 aa)    
Predicted Functional Partners:
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
 
 
 0.999
barA
Signal transduction histidine-protein kinase BarA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AEC5.
 
 0.999
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
 
 0.997
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q4UU85.
 
 0.991
todS
Sensor histidine kinase TodS; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:E0X9C7.
 
 0.987
phoR_4
Alkaline phosphatase synthesis sensor protein PhoR; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P23545.
 
 
 0.984
luxQ_1
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
 
 
 0.983
luxQ_4
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
 
 0.982
luxQ_3
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
 
 
 0.978
pleD_2
Response regulator PleD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9A5I5.
 
 0.970
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.