STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galK_2Galactokinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A6T3; Belongs to the GHMP kinase family. (483 aa)    
Predicted Functional Partners:
galT_1
Galactose-1-phosphate uridylyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P09148.
 0.998
galT_2
Galactose-1-phosphate uridylyltransferase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P09148.
 
 0.986
mro
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 0.968
galM
Aldose 1-epimerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39840.
 
 0.964
galE_3
UDP-glucose 4-epimerase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q7WTB1; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
 
 
 0.935
galK_1
Galactokinase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0A6T3; Belongs to the GHMP kinase family. GalK subfamily.
  
  
 
0.930
APW62324.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.899
APW62281.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
 
 0.554
APW59384.1
Retaining alpha-mannosidase; Manual prediction with dbCAN.
  
    0.457
rfbB_2
dTDP-glucose 4,6-dehydratase; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P39630; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
   
  
 0.439
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.