STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62104.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (602 aa)    
Predicted Functional Partners:
shpI
Neutral metalloprotease; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q08002.
 
     0.652
APW60594.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.633
APW59359.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.624
APW63649.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.616
APW62213.1
Putative beta-solenoid-type carbohydrate-active enzyme (GH, PL, or CE) of unknown function; Manual prediction.
  
    0.615
APW60934.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
     0.606
APW60872.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.594
APW61014.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.594
APW60221.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.582
bepA_8
Beta-barrel assembly-enhancing protease; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_00997.
 
     0.578
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.