STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APW62168.1Hypothetical protein; Ab initio prediction:Prodigal:2.6. (740 aa)    
Predicted Functional Partners:
pyrE_2
Orotate phosphoribosyltransferase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01208.
 
  
 0.929
APW59975.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
  
 0.890
menH_3
2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Ab initio prediction:Prodigal:2.6; protein motif:HAMAP:MF_01660.
      0.809
APW62034.1
Putative diguanylate cyclase, distantly related to bacterial beta-galactosidase; Manual prediction.
  
    0.788
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q4UU85.
  
    0.762
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
  
  
 0.677
barA
Signal transduction histidine-protein kinase BarA; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P0AEC5.
  
  
 0.677
APW62832.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
 
   
 0.671
recJ
Single-stranded-DNA-specific exonuclease RecJ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21893.
 
   
 0.649
outO
Type 4 prepilin-like proteins leader peptide-processing enzyme; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P31712.
  
  
 0.638
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.