STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pknL_2Serine/threonine-protein kinase PknL; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WI63. (562 aa)    
Predicted Functional Partners:
stp_2
Serine/threonine phosphatase stp; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8Y678.
  
   0.820
stp_3
Serine/threonine phosphatase stp; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8Y678.
  
   0.820
APW63457.1
Putative protein phosphatase 2C-type; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q5XAP6.
 
   0.818
sigD_1
ECF RNA polymerase sigma factor SigD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P9WGG9; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.524
prkC_17
Serine/threonine-protein kinase PrkC; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:O34507.
  
 
  
0.428
pkn6
Serine/threonine-protein kinase pkn6; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54738.
  
 
  
0.417
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.