STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kaiC_2Circadian clock protein kinase KaiC; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q8GGL1. (505 aa)    
Predicted Functional Partners:
kaiB
Circadian clock protein KaiB; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q79PF5.
 
 
 
 0.963
luxQ_6
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9KLK7.
 
   
 0.828
luxQ_7
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
 
 
 
 0.628
luxQ_5
Autoinducer 2 sensor kinase/phosphatase LuxQ; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P54302.
   
 
 0.584
kdpD_1
Sensor protein KdpD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21865.
    
 
 0.555
kdpD_2
Sensor protein KdpD; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:P21865.
    
 
 0.555
divL
Sensor protein DivL; Ab initio prediction:Prodigal:2.6; similar to AA sequence:UniProtKB:Q9RQQ9.
    
 
 0.555
APW62278.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.497
APW62275.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
       0.451
APW62968.1
Hypothetical protein; Ab initio prediction:Prodigal:2.6.
  
     0.444
Your Current Organism:
Paludisphaera borealis
NCBI taxonomy Id: 1387353
Other names: DSM 28747, Isosphaera sp. PX4, P. borealis, Paludisphaera borealis Kulichevskaya et al. 2016, Planctomycetaceae bacterium PT1, VKM B-2904, strain PX4
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.